FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index6_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 24382081 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5386660 | 2.6016738 | 5.4826756 | 1 |
| CCTGG | 5381345 | 2.5760682 | 6.3312645 | 1 |
| CTTCT | 5334325 | 2.5416858 | 5.6383767 | 1 |
| CTGGA | 5048670 | 2.4773266 | 8.711408 | 1 |
| TCCAG | 4944080 | 2.3823564 | 6.0414815 | 2 |
| CTGCT | 4931755 | 2.3553529 | 5.209849 | 1 |
| CTCCT | 4957860 | 2.325218 | 7.86082 | 1 |
| CTGGG | 4656990 | 2.2701626 | 8.493837 | 1 |
| CAGGA | 4565810 | 2.2604284 | 5.44265 | 1 |
| CTTCA | 4574275 | 2.199031 | 5.5562105 | 1 |
| CTCCA | 4639350 | 2.1952968 | 8.28207 | 1 |
| CCCAG | 4577925 | 2.1712854 | 7.440063 | 1 |
| CAGAA | 4239410 | 2.1126761 | 5.057182 | 1 |
| CTCTG | 4287125 | 2.0474846 | 6.443311 | 1 |
| TGGAA | 3729955 | 1.8760717 | 5.051726 | 2 |
| CTGGC | 3908050 | 1.8707973 | 5.240984 | 1 |
| CTGAA | 3765190 | 1.8597207 | 5.4308324 | 1 |
| CTCAG | 3637155 | 1.752601 | 5.902465 | 1 |
| CTGGT | 3456030 | 1.680804 | 5.200719 | 1 |
| CTTGG | 3346325 | 1.6274499 | 5.0879593 | 1 |
| CTCCC | 3342720 | 1.5431086 | 5.215428 | 1 |